RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g35840.1 View Network Show in Genome Browser |
| Other Names | Os10g0502400 |
| Description | shikimate/quinate 5-dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 19159093-19162504 Nucleotide Length: 1614 |
| Protein-coding | LOC_Os10g35840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g19630 LOC_Os01g66379 LOC_Os02g07230 LOC_Os03g08730 LOC_Os02g03540 LOC_Os06g41360 LOC_Os01g52530 LOC_Os01g58790 LOC_Os05g51800 LOC_Os03g56840 LOC_Os02g48390 More.. |
| Downstream Genes | LOC_Os11g43600 LOC_Os12g34874 LOC_Os12g41830 LOC_Os12g07650 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2926 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 rn00860 |
| Metacyc Pathways | ARO-PWY PWY-5188 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g35840.1 |
| Rice Genome Annotation | LOC_Os10g35840.1 |
| Ricechip | LOC_Os10g35840.1 |
| KEGG | osa:4349044 dosa:Os10t0502400-01 |
| Entrez-Gene | 4349044 |