RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g35930.1 View Network Show in Genome Browser |
| Other Names | Os10g0503100 |
| Description | OsPLIM2c - LIM domain protein, putative actin-binding protein and transcription factor, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 19198745-19200734 Nucleotide Length: 675 |
| Protein-coding | LOC_Os10g35930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005856 | cytoskeleton | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g08400 LOC_Os03g16090 LOC_Os06g07830 LOC_Os02g55970 LOC_Os01g48170 LOC_Os06g45050 LOC_Os05g47550 LOC_Os02g07900 LOC_Os01g50010 LOC_Os10g23090 LOC_Os06g48630 More.. |
| Downstream Genes | LOC_Os12g07300 LOC_Os10g41230 LOC_Os10g37060 LOC_Os10g41960 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR319a-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g35930.1 |
| Rice Genome Annotation | LOC_Os10g35930.1 |
| Ricechip | LOC_Os10g35930.1 |
| KEGG | osa:4349048 dosa:Os10t0503100-01 |
| Entrez-Gene | 4349048 |