RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g37340.1 View Network Show in Genome Browser |
| Other Names | Os10g0517500 |
| Description | cystathionine gamma-synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 20000791-20004599 Nucleotide Length: 1395 |
| Protein-coding | LOC_Os10g37340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g07860 LOC_Os03g58320 LOC_Os03g58300 LOC_Os02g16630 LOC_Os03g58290 LOC_Os07g35790 LOC_Os05g19954 LOC_Os08g04180 LOC_Os03g02030 LOC_Os06g45250 LOC_Os03g26440 More.. |
| Downstream Genes | LOC_Os11g16390 LOC_Os12g09290 LOC_Os12g38760 LOC_Os12g42870 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00920 rn00270 rn00450 |
| Metacyc Pathways | PWY-702 HOMOSER-METSYN-PWY PWY-801 PWY-701 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g37340.1 |
| Rice Genome Annotation | LOC_Os10g37340.1 |
| Ricechip | LOC_Os10g37340.1 |
| KEGG | osa:4349123 dosa:Os10t0517500-02 |
| Entrez-Gene | 4349123 |