RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g38040.1 View Network Show in Genome Browser |
| Other Names | Os10g0524300 |
| Description | lysM domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 20374252-20375455 Nucleotide Length: 327 |
| Protein-coding | LOC_Os10g38040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g21060 LOC_Os04g53810 LOC_Os07g34520 LOC_Os03g32580 LOC_Os07g31884 LOC_Os02g13870 |
| Downstream Genes | LOC_Os11g37950 LOC_Os10g42040 LOC_Os12g43640 LOC_Os11g02100 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1440a osa-miR1440b |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g38040.1 |
| Rice Genome Annotation | LOC_Os10g38040.1 |
| Ricechip | LOC_Os10g38040.1 |
| KEGG | osa:4349160 dosa:Os10t0524300-01 |
| Entrez-Gene | 4349160 |