RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g38540.1 View Network Show in Genome Browser |
| Other Names | Os10g0528900 |
| Description | glutathione S-transferase, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 20569119-20569541 Nucleotide Length: 696 |
| Protein-coding | LOC_Os10g38540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g35560 LOC_Os01g27260 LOC_Os03g04260 LOC_Os02g12800 LOC_Os01g29740 LOC_Os05g23620 LOC_Os07g09310 LOC_Os04g17050 LOC_Os01g54540 LOC_Os04g42930 LOC_Os03g63420 More.. |
| Downstream Genes | LOC_Os11g42350 LOC_Os11g37730 LOC_Os12g10604 LOC_Os12g40710 LOC_Os12g34380 LOC_Os12g03090 LOC_Os11g03400 LOC_Os12g16200 LOC_Os11g14220 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5808 osa-miR5338 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00480 |
| Metacyc Pathways | PWY-4061 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g38540.1 |
| Rice Genome Annotation | LOC_Os10g38540.1 |
| Ricechip | LOC_Os10g38540.1 |
| KEGG | osa:4349191 dosa:Os10t0528900-01 |
| Entrez-Gene | 4349191 |