RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g38900.1 View Network Show in Genome Browser |
| Other Names | Os10g0533000 |
| Description | erythronate-4-phosphate dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 20725051-20731000 Nucleotide Length: 1953 |
| Protein-coding | LOC_Os10g38900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0007267 | cell-cell signaling | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g16040 LOC_Os02g30624 LOC_Os09g37620 LOC_Os02g56050 LOC_Os04g31950 LOC_Os02g32460 |
| Downstream Genes | LOC_Os10g38910 LOC_Os11g40690 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g38900.1 |
| Rice Genome Annotation | LOC_Os10g38900.1 |
| Ricechip | LOC_Os10g38900.1 |
| KEGG | osa:4349220 dosa:Os10t0533000-01 |
| Entrez-Gene | 4349220 |