RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g38930.1 View Network Show in Genome Browser |
| Other Names | Os10g0533200 |
| Description | shikimate/quinate 5-dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 20736983-20738313 Nucleotide Length: 1011 |
| Protein-coding | LOC_Os10g38930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g38230 LOC_Os03g30790 LOC_Os08g17680 LOC_Os04g58090 LOC_Os01g59110 LOC_Os01g59100 LOC_Os06g39260 LOC_Os06g34040 LOC_Os03g51430 LOC_Os04g50790 LOC_Os03g58580 More.. |
| Downstream Genes | LOC_Os11g09280 LOC_Os12g07580 LOC_Os12g07490 LOC_Os11g37920 LOC_Os12g42520 LOC_Os12g32950 LOC_Os11g09010 LOC_Os11g40690 LOC_Os11g38780 LOC_Os12g29950 LOC_Os12g37419 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | ARO-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g38930.1 |
| Rice Genome Annotation | LOC_Os10g38930.1 |
| Ricechip | LOC_Os10g38930.1 |
| KEGG | osa:4349222 dosa:Os10t0533200-01 |
| Entrez-Gene | 4349222 |