RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g39030.1 View Network Show in Genome Browser |
| Other Names | Os10g0534900 |
| Description | homeobox domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 20801749-20806660 Nucleotide Length: 1761 |
| Protein-coding | LOC_Os10g39030 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g03884 LOC_Os05g38120 LOC_Os03g03164 LOC_Os08g19650 LOC_Os02g08544 LOC_Os06g43860 LOC_Os07g03770 LOC_Os01g19694 LOC_Os01g62920 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g39030.1 |
| Rice Genome Annotation | LOC_Os10g39030.1 |
| Ricechip | LOC_Os10g39030.1 |
| KEGG | osa:4349233 dosa:Os10t0534900-01 |
| Entrez-Gene | 4349233 |