RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g39130.1 View Network Show in Genome Browser |
| Other Names | Os10g0536100 |
| Description | OsMADS56 - MADS-box family gene with MIKCc type-box, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 20862952-20873797 Nucleotide Length: 702 |
| Protein-coding | LOC_Os10g39130 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g01820 LOC_Os03g54160 LOC_Os07g41370 LOC_Os09g12800 LOC_Os07g19560 LOC_Os06g08380 LOC_Os01g55040 LOC_Os07g37510 LOC_Os04g53930 LOC_Os07g37530 LOC_Os01g22710 More.. |
| Downstream Genes | LOC_Os11g40100 LOC_Os12g31350 LOC_Os11g10100 |
| Reference | |
|---|---|
| PubMed | 15659573 19558411 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g39130.1 |
| Rice Genome Annotation | LOC_Os10g39130.1 |
| Ricechip | LOC_Os10g39130.1 |
| KEGG | osa:4349237 dosa:Os10t0536100-01 |
| Entrez-Gene | 4349237 |