RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g39210.1 View Network Show in Genome Browser |
| Other Names | Os10g0537400 |
| Description | heavy metal-associated domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 20935118-20935789 Nucleotide Length: 558 |
| Protein-coding | LOC_Os10g39210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os10g18530 LOC_Os09g34230 LOC_Os08g38160 LOC_Os07g13800 LOC_Os06g18790 LOC_Os05g42060 LOC_Os04g44354 LOC_Os03g60960 LOC_Os01g59110 LOC_Os01g53420 LOC_Os01g53380 More.. |
| Downstream Genes | LOC_Os11g25454 LOC_Os11g38650 LOC_Os11g25990 LOC_Os12g37510 LOC_Os11g04860 LOC_Os11g26950 LOC_Os11g27370 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g39210.1 |
| Rice Genome Annotation | LOC_Os10g39210.1 |
| Ricechip | LOC_Os10g39210.1 |
| KEGG | dosa:Os10t0537400-00 |