RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g39410.1 View Network Show in Genome Browser |
| Other Names | Os10g0539500 |
| Description | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 21019255-21019903 Nucleotide Length: 312 |
| Protein-coding | LOC_Os10g39410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g06510 LOC_Os06g06460 LOC_Os05g36280 LOC_Os04g34240 LOC_Os01g64640 LOC_Os08g33100 LOC_Os07g36140 LOC_Os01g62230 LOC_Os06g04030 LOC_Os03g27310 LOC_Os03g51200 More.. |
| Downstream Genes | LOC_Os11g05730 LOC_Os12g34510 LOC_Os12g25120 LOC_Os11g04070 LOC_Os12g03880 LOC_Os11g08330 LOC_Os11g38959 LOC_Os12g26030 LOC_Os11g11390 LOC_Os11g10100 LOC_Os11g29190 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g39410.1 |
| Rice Genome Annotation | LOC_Os10g39410.1 |
| Ricechip | LOC_Os10g39410.1 |
| KEGG | osa:4349248 dosa:Os10t0539500-01 |
| Entrez-Gene | 4349248 |