RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g39620.7 View Network Show in Genome Browser |
| Other Names | Os10g0542200 |
| Description | ubiquitin family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 21170600-21174587 Nucleotide Length: 1431 |
| Protein-coding | LOC_Os10g39620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g33340 LOC_Os09g39500 LOC_Os03g13170 LOC_Os06g46770 LOC_Os05g42424 LOC_Os02g06640 LOC_Os05g06770 LOC_Os02g08300 LOC_Os01g22490 LOC_Os04g53620 LOC_Os02g57050 More.. |
| Downstream Genes | LOC_Os11g07490 LOC_Os12g04924 LOC_Os11g04880 LOC_Os11g07280 LOC_Os11g04070 LOC_Os12g03880 LOC_Os11g07870 LOC_Os12g43363 LOC_Os11g13540 LOC_Os11g13530 LOC_Os11g16390 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 osa-miR2866 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g39620.7 |
| Rice Genome Annotation | LOC_Os10g39620.7 |
| Ricechip | LOC_Os10g39620.7 |
| KEGG | osa:4349264 dosa:Os10t0542200-01 |
| Entrez-Gene | 4349264 |