RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g40130.1 View Network Show in Genome Browser |
| Other Names | Os10g0548900 |
| Description | Mur ligase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 21482733-21486316 Nucleotide Length: 2274 |
| Protein-coding | LOC_Os10g40130 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g11260 LOC_Os01g33230 LOC_Os02g04500 LOC_Os05g37160 LOC_Os04g56970 LOC_Os03g44420 LOC_Os07g46640 LOC_Os09g25580 LOC_Os02g55910 LOC_Os03g12320 LOC_Os08g20420 More.. |
| Downstream Genes | LOC_Os11g08980 LOC_Os12g01160 LOC_Os11g01154 LOC_Os11g02830 LOC_Os11g35330 LOC_Os12g37980 LOC_Os11g35860 LOC_Os12g02810 |
| Pathways | |
|---|---|
| Metacyc Pathways | PEPTIDOGLYCANSYN-PWY PWY-3841 PWY-2161 PWY-3742 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g40130.1 |
| Rice Genome Annotation | LOC_Os10g40130.1 |
| Ricechip | LOC_Os10g40130.1 |
| KEGG | osa:4349304 dosa:Os10t0548900-01 |
| Entrez-Gene | 4349304 |