RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g40360.1 View Network Show in Genome Browser |
| Other Names | Os10g0550900 |
| Description | proline oxidase, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 21617952-21620589 Nucleotide Length: 1473 |
| Protein-coding | LOC_Os10g40360 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g05130 LOC_Os01g57460 LOC_Os07g44800 LOC_Os03g04000 LOC_Os09g32430 LOC_Os03g60180 LOC_Os03g08220 LOC_Os05g49770 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00330 rn01100 rn01110 |
| Metacyc Pathways | PWY-4561 PROUT-PWY CITRULBIO-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g40360.1 |
| Rice Genome Annotation | LOC_Os10g40360.1 |
| Ricechip | LOC_Os10g40360.1 |
| KEGG | osa:4349318 dosa:Os10t0550900-01 |
| Entrez-Gene | 4349318 |