RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g40730.1 View Network Show in Genome Browser |
| Other Names | Os10g0556100 |
| Description | expansin precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 21858750-21861307 Nucleotide Length: 861 |
| Protein-coding | LOC_Os10g40730 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os09g36860 LOC_Os05g04820 LOC_Os10g37240 LOC_Os10g22590 LOC_Os01g47780 LOC_Os01g46290 LOC_Os01g68589 LOC_Os01g49200 LOC_Os06g09630 LOC_Os03g64320 LOC_Os01g56330 More.. |
| Downstream Genes | LOC_Os11g02350 LOC_Os12g40890 LOC_Os11g36150 LOC_Os10g42110 LOC_Os11g07280 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1861c osa-miR1861n |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g40730.1 |
| Rice Genome Annotation | LOC_Os10g40730.1 |
| Ricechip | LOC_Os10g40730.1 |
| KEGG | osa:4349350 dosa:Os10t0556100-01 |
| Entrez-Gene | 4349350 |