RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g41150.1 View Network Show in Genome Browser |
| Other Names | Os10g0560900 |
| Description | aminotransferase, classes I and II, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 22105370-22109134 Nucleotide Length: 1353 |
| Protein-coding | LOC_Os10g41150 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g11440 LOC_Os09g17840 LOC_Os09g17830 LOC_Os08g42730 LOC_Os04g04020 LOC_Os08g14770 LOC_Os06g04270 LOC_Os04g52130 LOC_Os03g21900 LOC_Os05g29760 LOC_Os02g04710 More.. |
| Downstream Genes | LOC_Os12g32240 LOC_Os11g08569 LOC_Os11g18194 LOC_Os11g35710 LOC_Os11g35040 LOC_Os11g18366 LOC_Os11g32240 LOC_Os11g42510 LOC_Os11g20790 LOC_Os10g42950 LOC_Os11g35390 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1848 osa-miR172c |
| Pathways | |
|---|---|
| KEGG Pathways | rn00780 rn01100 |
| Metacyc Pathways | PWY-3701 BIOTIN-SYNTHESIS-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g41150.1 |
| Rice Genome Annotation | LOC_Os10g41150.1 |
| Ricechip | LOC_Os10g41150.1 |
| KEGG | osa:4349380 dosa:Os10t0560900-01 |
| Entrez-Gene | 4349380 |