RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g41330.1 View Network Show in Genome Browser |
| Other Names | Os10g0562900 |
| Description | AP2 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 22213115-22214678 Nucleotide Length: 822 |
| Protein-coding | LOC_Os10g41330 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g61080 LOC_Os05g27730 LOC_Os03g09020 |
| Downstream Genes | LOC_Os11g12340 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1320-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g41330.1 |
| Rice Genome Annotation | LOC_Os10g41330.1 |
| Ricechip | LOC_Os10g41330.1 |
| KEGG | osa:4349395 |
| Entrez-Gene | 4349395 |