RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g41340.1 View Network Show in Genome Browser |
| Other Names | Os10g0563000 |
| Description | palmitoyl-protein thioesterase 1 precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 22216406-22222316 Nucleotide Length: 945 |
| Protein-coding | LOC_Os10g41340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g42000 LOC_Os05g41060 LOC_Os01g59790 LOC_Os03g59740 LOC_Os01g16030 LOC_Os10g32550 LOC_Os02g09940 LOC_Os05g31290 LOC_Os07g12200 LOC_Os07g12170 LOC_Os05g04850 More.. |
| Downstream Genes | LOC_Os11g43890 LOC_Os12g04160 LOC_Os11g04370 LOC_Os12g04930 LOC_Os11g04930 LOC_Os11g04890 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00062 rn01040 rn01100 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g41340.1 |
| Rice Genome Annotation | LOC_Os10g41340.1 |
| Ricechip | LOC_Os10g41340.1 |
| KEGG | osa:4349396 dosa:Os10t0563000-01 |
| Entrez-Gene | 4349396 |