RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g41780.1 View Network Show in Genome Browser |
| Other Names | Os10g0567400 |
| Description | chlorophyllide a oxygenase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 22482198-22486537 Nucleotide Length: 1626 |
| Protein-coding | LOC_Os10g41780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g37030 LOC_Os02g32120 LOC_Os01g17170 LOC_Os04g32660 LOC_Os02g36570 LOC_Os01g51410 LOC_Os06g45820 LOC_Os03g20700 LOC_Os01g55950 LOC_Os03g05800 LOC_Os08g45190 More.. |
| Downstream Genes | LOC_Os12g02530 LOC_Os11g02610 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Reference | |
|---|---|
| PubMed | 15952067 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g41780.1 |
| Rice Genome Annotation | LOC_Os10g41780.1 |
| Ricechip | LOC_Os10g41780.1 |
| KEGG | osa:4349433 dosa:Os10t0567400-01 |
| Entrez-Gene | 4349433 |