RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g42240.1 View Network Show in Genome Browser |
| Other Names | Os10g0573000 |
| Description | kinase, pfkB family, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 22750204-22753105 Nucleotide Length: 1377 |
| Protein-coding | LOC_Os10g42240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g43750 LOC_Os01g01620 LOC_Os05g29760 LOC_Os09g12560 LOC_Os02g41590 LOC_Os04g54500 LOC_Os01g65400 LOC_Os02g08380 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3980a-3p osa-miR3980b-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00030 |
| Metacyc Pathways | RIBOKIN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g42240.1 |
| Rice Genome Annotation | LOC_Os10g42240.1 |
| Ricechip | LOC_Os10g42240.1 |
| KEGG | osa:4349470 dosa:Os10t0573000-01 |
| Entrez-Gene | 4349470 |