RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g42320.1 View Network Show in Genome Browser |
| Other Names | Os10g0573900 |
| Description | nonsense-mediated mRNA decay protein 3, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 22781929-22784426 Nucleotide Length: 1572 |
| Protein-coding | LOC_Os10g42320 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g69970 LOC_Os02g49270 LOC_Os03g61560 LOC_Os03g22320 LOC_Os04g58830 LOC_Os09g37860 LOC_Os03g56800 LOC_Os02g54110 LOC_Os04g50660 LOC_Os02g44810 LOC_Os03g40110 More.. |
| Downstream Genes | LOC_Os11g07500 LOC_Os12g42370 LOC_Os12g29660 LOC_Os12g07300 LOC_Os11g19250 LOC_Os12g43830 LOC_Os12g36950 LOC_Os12g04010 LOC_Os11g04200 LOC_Os12g03822 LOC_Os11g03990 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g42320.1 |
| Rice Genome Annotation | LOC_Os10g42320.1 |
| Ricechip | LOC_Os10g42320.1 |
| KEGG | osa:4349477 dosa:Os10t0573900-01 |
| Entrez-Gene | 4349477 |