RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g42439.1 View Network Show in Genome Browser |
| Other Names | Os10g0575200 |
| Description | heat shock protein DnaJ, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 22861341-22875955 Nucleotide Length: 7899 |
| Protein-coding | LOC_Os10g42439 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0009606 | tropism | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0005768 | endosome | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os09g31486 LOC_Os01g08560 LOC_Os03g50250 LOC_Os03g16880 LOC_Os05g30480 LOC_Os08g09770 LOC_Os05g35400 LOC_Os02g02410 LOC_Os03g02260 LOC_Os06g10990 LOC_Os06g46600 More.. |
| Downstream Genes | LOC_Os12g05760 LOC_Os11g08470 LOC_Os11g08440 LOC_Os11g08460 LOC_Os12g14070 LOC_Os11g47760 LOC_Os12g38180 LOC_Os11g10420 LOC_Os12g17070 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g42439.1 |
| Rice Genome Annotation | LOC_Os10g42439.1 |
| Ricechip | LOC_Os10g42439.1 |
| KEGG | osa:4349486 dosa:Os10t0575200-01 |
| Entrez-Gene | 4349486 |