RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g42490.2 View Network Show in Genome Browser |
| Other Names | Os10g0575600 |
| Description | homeobox and START domains containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 22910460-22916203 Nucleotide Length: 2649 |
| Protein-coding | LOC_Os10g42490 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os10g33930 LOC_Os10g31770 LOC_Os10g35250 LOC_Os10g40590 LOC_Os05g29870 LOC_Os09g33450 LOC_Os05g36090 LOC_Os06g51220 LOC_Os03g03164 LOC_Os08g05870 LOC_Os08g42370 More.. |
| Downstream Genes | LOC_Os11g43640 LOC_Os11g32960 LOC_Os12g35710 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2926 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g42490.2 |
| Rice Genome Annotation | LOC_Os10g42490.2 |
| Ricechip | LOC_Os10g42490.2 |
| KEGG | osa:4349488 dosa:Os10t0575600-01 |
| Entrez-Gene | 4349488 |