RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g42690.1 View Network Show in Genome Browser |
| Other Names | Os10g0577600 |
| Description | jmjC domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 23025714-23031771 Nucleotide Length: 2577 |
| Protein-coding | LOC_Os10g42690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g31594 LOC_Os01g36630 LOC_Os03g27250 LOC_Os03g22540 LOC_Os09g31380 LOC_Os09g31050 LOC_Os01g56640 LOC_Os02g58210 LOC_Os09g37080 LOC_Os03g58010 LOC_Os05g47650 More.. |
| Downstream Genes | LOC_Os11g36450 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5079a osa-miR5079b |
| Reference | |
|---|---|
| PubMed | 18765808 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g42690.1 |
| Rice Genome Annotation | LOC_Os10g42690.1 |
| Ricechip | LOC_Os10g42690.1 |
| KEGG | osa:4349499 dosa:Os10t0577600-01 |
| Entrez-Gene | 4349499 |