RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g43050.1 View Network Show in Genome Browser |
| Other Names | Os10g0580800 |
| Description | OsClp11 - Putative Clp protease homologue, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 23190115-23192319 Nucleotide Length: 882 |
| Protein-coding | LOC_Os10g43050 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g19150 LOC_Os02g35630 LOC_Os01g66330 LOC_Os06g20320 LOC_Os05g45750 LOC_Os09g36300 LOC_Os01g54040 LOC_Os05g44590 LOC_Os03g19350 LOC_Os07g48960 LOC_Os08g02140 More.. |
| Downstream Genes | LOC_Os12g32790 LOC_Os12g32710 LOC_Os11g45780 LOC_Os11g18170 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00260 rn01100 rn01120 |
| Metacyc Pathways | PWY-702 HOMOSER-THRESYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g43050.1 |
| Rice Genome Annotation | LOC_Os10g43050.1 |
| Ricechip | LOC_Os10g43050.1 |
| KEGG | osa:4349523 dosa:Os10t0580800-01 |
| Entrez-Gene | 4349523 |