RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g02400.1 View Network Show in Genome Browser |
| Other Names | Os11g0116000 |
| Description | LTPL8 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 715400-716542 Nucleotide Length: 357 |
| Protein-coding | LOC_Os11g02400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0008289 | lipid binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g07920 LOC_Os03g57970 LOC_Os03g07100 LOC_Os08g35760 LOC_Os02g37060 LOC_Os02g49870 LOC_Os09g30340 LOC_Os07g37240 LOC_Os04g33830 LOC_Os01g59870 LOC_Os10g30290 More.. |
| Downstream Genes | LOC_Os12g02330 LOC_Os12g37650 LOC_Os12g05430 LOC_Os11g26850 LOC_Os11g13890 LOC_Os12g08770 LOC_Os11g47760 LOC_Os12g42130 LOC_Os11g13850 LOC_Os12g03090 LOC_Os11g03400 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5788 osa-miR816 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g02400.1 |
| Rice Genome Annotation | LOC_Os11g02400.1 |
| Ricechip | LOC_Os11g02400.1 |
| KEGG | osa:4349605 dosa:Os11t0116000-01 |
| Entrez-Gene | 4349605 |