RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g04390.1 View Network Show in Genome Browser |
| Other Names | Os11g0139500 |
| Description | RNA recognition motif containing protein, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 1821359-1826093 Nucleotide Length: 1506 |
| Protein-coding | LOC_Os11g04390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g59710 LOC_Os07g47630 LOC_Os08g37960 LOC_Os07g07220 LOC_Os02g13990 LOC_Os05g30410 LOC_Os04g56760 LOC_Os09g19560 LOC_Os04g30430 LOC_Os05g48960 LOC_Os02g39720 More.. |
| Downstream Genes | LOC_Os12g18880 LOC_Os11g43620 LOC_Os11g41820 LOC_Os12g44390 LOC_Os12g37370 LOC_Os11g08940 LOC_Os12g43600 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR396f-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g04390.1 |
| Rice Genome Annotation | LOC_Os11g04390.1 |
| Ricechip | LOC_Os11g04390.1 |
| KEGG | osa:4349728 dosa:Os11t0139500-02 |
| Entrez-Gene | 4349728 |