RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g05130.1 View Network Show in Genome Browser |
| Other Names | Os11g0148700 |
| Description | PHD-finger family protein, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 2247706-2255775 Nucleotide Length: 5667 |
| Protein-coding | LOC_Os11g05130 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g48820 LOC_Os05g23530 LOC_Os03g38230 LOC_Os07g41740 LOC_Os07g12910 LOC_Os06g20410 LOC_Os04g14510 LOC_Os03g53700 LOC_Os03g50780 LOC_Os02g52960 LOC_Os01g65600 More.. |
| Downstream Genes | LOC_Os12g34330 LOC_Os12g24540 LOC_Os11g14010 LOC_Os11g18770 LOC_Os12g37570 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3981-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g05130.1 |
| Rice Genome Annotation | LOC_Os11g05130.1 |
| Ricechip | LOC_Os11g05130.1 |
| KEGG | osa:4349776 dosa:Os11t0148700-01 |
| Entrez-Gene | 4349776 |