RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g05394.1 View Network Show in Genome Browser |
| Other Names | Os11g0151600 |
| Description | nucampholin, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 2418477-2423365 Nucleotide Length: 1179 |
| Protein-coding | LOC_Os11g05394 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g22260 LOC_Os05g05450 LOC_Os03g27970 LOC_Os07g44970 LOC_Os03g21990 LOC_Os02g01740 LOC_Os05g07050 LOC_Os04g28090 LOC_Os03g22570 LOC_Os07g36940 LOC_Os06g33250 More.. |
| Downstream Genes | LOC_Os12g42140 LOC_Os12g05410 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2099-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g05394.1 |
| Rice Genome Annotation | LOC_Os11g05394.1 |
| Ricechip | LOC_Os11g05394.1 |
| KEGG | osa:4349794 dosa:Os11t0151600-01 |
| Entrez-Gene | 4349794 |