RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g05552.1 View Network Show in Genome Browser |
| Other Names | Os11g0153600 |
| Description | signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 2512383-2517219 Nucleotide Length: 747 |
| Protein-coding | LOC_Os11g05552 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g40610 LOC_Os05g49130 LOC_Os09g32274 LOC_Os02g32400 LOC_Os02g11030 LOC_Os02g43600 LOC_Os01g72800 LOC_Os05g49220 LOC_Os09g14610 LOC_Os03g52640 LOC_Os08g37444 More.. |
| Downstream Genes | LOC_Os11g41910 LOC_Os12g29990 LOC_Os12g44390 LOC_Os11g05570 LOC_Os12g01916 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g05552.1 |
| Rice Genome Annotation | LOC_Os11g05552.1 |
| Ricechip | LOC_Os11g05552.1 |
| KEGG | osa:9267495 dosa:Os11t0153600-01 |
| Entrez-Gene | 9267495 |