RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g05556.2 View Network Show in Genome Browser |
| Other Names | Os11g0153700 |
| Description | signal recognition particle 54 kDa protein, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 2517481-2521945 Nucleotide Length: 1449 |
| Protein-coding | LOC_Os11g05556 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g49130 LOC_Os08g40610 LOC_Os09g32274 LOC_Os02g32400 LOC_Os02g43600 LOC_Os02g11030 LOC_Os03g40010 LOC_Os01g70020 LOC_Os01g72800 LOC_Os02g04050 LOC_Os02g04060 More.. |
| Downstream Genes | LOC_Os12g44390 LOC_Os11g05570 LOC_Os12g01916 LOC_Os11g19720 LOC_Os11g26030 LOC_Os12g42370 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g05556.2 |
| Rice Genome Annotation | LOC_Os11g05556.2 |
| Ricechip | LOC_Os11g05556.2 |
| KEGG | osa:4349809 dosa:Os11t0153700-01 |
| Entrez-Gene | 4349809 |