RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g05640.1 View Network Show in Genome Browser |
| Other Names | Os11g0154900 |
| Description | bZIP transcription factor domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 2560816-2563634 Nucleotide Length: 1185 |
| Protein-coding | LOC_Os11g05640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os09g34060 LOC_Os04g54474 LOC_Os03g58250 LOC_Os03g21800 LOC_Os02g49560 LOC_Os01g59350 LOC_Os08g43090 LOC_Os05g34050 LOC_Os02g10860 LOC_Os02g52780 LOC_Os01g64730 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Reference | |
|---|---|
| PubMed | 8940135 18065552 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g05640.1 |
| Rice Genome Annotation | LOC_Os11g05640.1 |
| Ricechip | LOC_Os11g05640.1 |
| KEGG | dosa:Os11t0154900-01 |