RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os11g06020.1 View Network Show in Genome Browser
Other Names	Os11g0158832,Os11g0158600
Description	homeobox domain containing protein, expressed
Gene Attributes	Chromosome: Chr11 CDS Coordinates (5'-3'): 2837990-2844518 Nucleotide Length: 2037
Protein-coding	LOC_Os11g06020

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0009719	response to endogenous stimulus	Biological Process	IEA
GO:0009719	response to endogenous stimulus	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os09g31130 LOC_Os05g25910 LOC_Os06g38470 LOC_Os05g38120 LOC_Os05g03884 LOC_Os01g19694 LOC_Os01g62920 LOC_Os02g12380 LOC_Os02g12350 LOC_Os10g05230 LOC_Os03g38950 More..
Downstream Genes	LOC_Os11g18947

miRNA Regulations
miRNAs	osa-miR5809

Database Links
Gramene	LOC_Os11g06020.1
Rice Genome Annotation	LOC_Os11g06020.1
Ricechip	LOC_Os11g06020.1
KEGG	osa:4349837 dosa:Os11t0158832-00 dosa:Os11t0158600-00