RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g06890.1 View Network Show in Genome Browser |
| Other Names | Os11g0169900 |
| Description | vacuolar ATP synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 3378031-3380310 Nucleotide Length: 498 |
| Protein-coding | LOC_Os11g06890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g01560 LOC_Os06g45120 LOC_Os01g42430 LOC_Os02g34510 LOC_Os02g07870 LOC_Os09g20090 LOC_Os06g37080 LOC_Os01g73130 LOC_Os06g37180 LOC_Os05g51530 LOC_Os01g51380 More.. |
| Downstream Genes | LOC_Os12g44000 LOC_Os11g09140 LOC_Os11g38160 LOC_Os12g13890 LOC_Os11g41610 LOC_Os12g05430 LOC_Os12g32380 |
| Pathways | |
|---|---|
| KEGG Pathways | rn01100 rn00680 rn00190 rn00195 |
| Metacyc Pathways | PWY-6126 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g06890.1 |
| Rice Genome Annotation | LOC_Os11g06890.1 |
| Ricechip | LOC_Os11g06890.1 |
| KEGG | osa:4349890 dosa:Os11t0169900-01 |
| Entrez-Gene | 4349890 |