RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g07600.1 View Network Show in Genome Browser |
| Other Names | Os11g0177400 |
| Description | ABC-2 type transporter domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 3853546-3857282 Nucleotide Length: 1839 |
| Protein-coding | LOC_Os11g07600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g43700 LOC_Os06g42720 LOC_Os02g09810 LOC_Os06g16420 LOC_Os02g49510 LOC_Os01g61044 LOC_Os09g26290 LOC_Os08g18044 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 osa-miR1858a osa-miR1858b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 |
| Metacyc Pathways | P1-PWY PWY0-163 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g07600.1 |
| Rice Genome Annotation | LOC_Os11g07600.1 |
| Ricechip | LOC_Os11g07600.1 |
| KEGG | osa:4349927 dosa:Os11t0177400-01 |
| Entrez-Gene | 4349927 |