RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g08569.1 View Network Show in Genome Browser |
| Other Names | Os11g0189600 |
| Description | cycloartenol synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 4514098-4519739 Nucleotide Length: 2280 |
| Protein-coding | LOC_Os11g08569 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g43170 LOC_Os05g34770 LOC_Os02g01920 LOC_Os09g34960 LOC_Os03g02710 LOC_Os02g32490 LOC_Os01g11300 LOC_Os10g35290 LOC_Os09g07830 LOC_Os04g33190 LOC_Os01g04260 More.. |
| Downstream Genes | LOC_Os12g32240 LOC_Os11g19250 LOC_Os12g43670 LOC_Os11g32240 LOC_Os11g20790 LOC_Os12g13380 LOC_Os12g43740 LOC_Os12g07110 LOC_Os12g43130 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR408-5p |
| Reference | |
|---|---|
| PubMed | 22150097 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g08569.1 |
| Rice Genome Annotation | LOC_Os11g08569.1 |
| Ricechip | LOC_Os11g08569.1 |
| KEGG | osa:9268610 dosa:Os11t0189600-01 |
| Entrez-Gene | 9268610 |