RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g08660.1 View Network Show in Genome Browser |
| Other Names | Os11g0191300 |
| Description | TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 4612024-4612575 Nucleotide Length: 2706 |
| Protein-coding | LOC_Os11g08660 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g43300 LOC_Os04g51700 LOC_Os03g49210 LOC_Os05g43610 LOC_Os07g49010 LOC_Os06g05190 LOC_Os01g71256 LOC_Os06g47580 LOC_Os07g23110 LOC_Os03g22450 LOC_Os02g32860 More.. |
| Downstream Genes | LOC_Os11g31890 LOC_Os11g36390 LOC_Os12g19370 LOC_Os12g37400 LOC_Os12g07720 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g08660.1 |
| Rice Genome Annotation | LOC_Os11g08660.1 |
| Ricechip | LOC_Os11g08660.1 |
| KEGG | osa:4349978 dosa:Os11t0191300-02 |
| Entrez-Gene | 4349978 |