RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g11050.1 View Network Show in Genome Browser |
| Other Names | Os11g0216900 |
| Description | initiation factor 2 subunit family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 6093826-6094649 Nucleotide Length: 1527 |
| Protein-coding | LOC_Os11g11050 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g54790 LOC_Os05g35730 LOC_Os10g25320 LOC_Os10g37690 LOC_Os03g23970 LOC_Os07g15880 LOC_Os03g07570 LOC_Os10g36760 LOC_Os06g46372 LOC_Os10g25950 LOC_Os03g20750 More.. |
| Downstream Genes | LOC_Os11g20790 LOC_Os12g13380 LOC_Os12g41250 LOC_Os12g13390 LOC_Os11g40510 LOC_Os11g26850 LOC_Os12g43630 LOC_Os11g14220 LOC_Os12g08260 LOC_Os12g35570 LOC_Os11g29370 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g11050.1 |
| Rice Genome Annotation | LOC_Os11g11050.1 |
| Ricechip | LOC_Os11g11050.1 |
| KEGG | osa:4350083 dosa:Os11t0216900-01 |
| Entrez-Gene | 4350083 |