RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g13820.1 View Network Show in Genome Browser |
| Other Names | Os11g0242200 |
| Description | protein phosphatase 2C, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 7595274-7606870 Nucleotide Length: 1194 |
| Protein-coding | LOC_Os11g13820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g47950 LOC_Os01g51200 LOC_Os03g21730 LOC_Os05g20150 LOC_Os03g22050 LOC_Os02g30540 LOC_Os06g06960 LOC_Os04g13640 LOC_Os05g06990 LOC_Os01g56330 LOC_Os03g49750 More.. |
| Downstream Genes | LOC_Os12g38860 LOC_Os11g36180 LOC_Os11g35500 LOC_Os12g01740 LOC_Os12g41710 LOC_Os12g41260 LOC_Os12g37570 LOC_Os11g34624 LOC_Os11g14050 LOC_Os11g41100 LOC_Os11g35274 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g13820.1 |
| Rice Genome Annotation | LOC_Os11g13820.1 |
| Ricechip | LOC_Os11g13820.1 |
| KEGG | osa:9267539 dosa:Os11t0242200-00 |
| Entrez-Gene | 9267539 |