RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os11g25160.1 View Network Show in Genome Browser
Other Names	Os11g0438600,Os11g0438700
Description	tropinone reductase 2, putative, expressed
Gene Attributes	Chromosome: Chr11 CDS Coordinates (5'-3'): 14315973-14317023 Nucleotide Length: 1350
Protein-coding	LOC_Os11g25160

Gene Ontology Classification
GO	Name	Type	Code
GO:0008152	metabolic process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g18590 LOC_Os09g36860 LOC_Os08g43580 LOC_Os03g63930 LOC_Os07g12150 LOC_Os03g22950 LOC_Os05g31290 LOC_Os02g10320 LOC_Os04g32070 LOC_Os06g09630 LOC_Os04g36800 More..
Downstream Genes	LOC_Os11g25700 LOC_Os12g34890 LOC_Os11g31900 LOC_Os12g43740 LOC_Os12g41590 LOC_Os12g27830 LOC_Os11g37900

miRNA Regulations
miRNAs	osa-miR2867-5p

Pathways
KEGG Pathways	rn00010 rn01100 rn01110 rn01120
Metacyc Pathways	PWY-5076 PWY-5082 PWY-5078 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5057 PWY-5079 ENTBACSYN-PWY

Database Links
Gramene	LOC_Os11g25160.1
Rice Genome Annotation	LOC_Os11g25160.1
Ricechip	LOC_Os11g25160.1
KEGG	osa:4350416 dosa:Os11t0438600-00 dosa:Os11t0438700-01