RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g25160.6 View Network Show in Genome Browser |
| Other Names | Os11g0438700 |
| Description | tropinone reductase 2, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 14330647-14336166 Nucleotide Length: 504 |
| Protein-coding | LOC_Os11g25160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18590 LOC_Os09g36860 LOC_Os08g43580 LOC_Os03g63930 LOC_Os07g12150 LOC_Os03g22950 LOC_Os05g31290 LOC_Os02g10320 LOC_Os04g32070 LOC_Os06g09630 LOC_Os04g36800 More.. |
| Downstream Genes | LOC_Os11g25700 LOC_Os12g34890 LOC_Os11g31900 LOC_Os12g43740 LOC_Os12g41590 LOC_Os12g27830 LOC_Os11g37900 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn01100 rn01110 rn01120 |
| Metacyc Pathways | PWY-5076 PWY-5082 PWY-5078 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5057 PWY-5079 ENTBACSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g25160.6 |
| Rice Genome Annotation | LOC_Os11g25160.6 |
| Ricechip | LOC_Os11g25160.6 |
| KEGG | osa:4350416 dosa:Os11t0438700-01 |
| Entrez-Gene | 4350416 |