RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g25700.1 View Network Show in Genome Browser |
| Other Names | Os11g0443700 |
| Description | tropinone reductase, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 14651918-14657291 Nucleotide Length: 783 |
| Protein-coding | LOC_Os11g25700 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os11g25160 LOC_Os04g32070 LOC_Os05g08950 LOC_Os11g07930 LOC_Os11g07922 LOC_Os06g04870 LOC_Os05g51670 LOC_Os02g30714 LOC_Os01g05840 LOC_Os09g39670 LOC_Os04g41960 More.. |
| Downstream Genes | LOC_Os12g43740 LOC_Os12g41590 LOC_Os12g27830 LOC_Os11g30560 LOC_Os12g39240 LOC_Os12g34890 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn01100 rn01110 rn01120 |
| Metacyc Pathways | PWY-5076 PWY-5082 PWY-5078 PWY-5057 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5079 ENTBACSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g25700.1 |
| Rice Genome Annotation | LOC_Os11g25700.1 |
| Ricechip | LOC_Os11g25700.1 |
| KEGG | osa:4350428 dosa:Os11t0443700-01 |
| Entrez-Gene | 4350428 |