RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g26160.1 View Network Show in Genome Browser |
| Other Names | Os11g0448400 |
| Description | RNA polymerase sigma factor, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 14972992-14974832 Nucleotide Length: 1695 |
| Protein-coding | LOC_Os11g26160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os09g10760 LOC_Os05g01970 LOC_Os03g31150 LOC_Os05g49220 LOC_Os07g33660 LOC_Os07g38300 LOC_Os01g54540 LOC_Os08g41990 LOC_Os09g38420 LOC_Os03g45400 LOC_Os11g02450 More.. |
| Downstream Genes | LOC_Os12g37610 LOC_Os11g41910 LOC_Os11g38030 LOC_Os11g34210 LOC_Os12g35630 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g26160.1 |
| Rice Genome Annotation | LOC_Os11g26160.1 |
| Ricechip | LOC_Os11g26160.1 |
| KEGG | osa:4350441 dosa:Os11t0448400-02 |
| Entrez-Gene | 4350441 |