RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g26850.2 View Network Show in Genome Browser |
| Other Names | Os11g0455500 |
| Description | erythronate-4-phosphate dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 15418631-15419367 Nucleotide Length: 1353 |
| Protein-coding | LOC_Os11g26850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g40580 LOC_Os03g55150 LOC_Os07g02210 LOC_Os11g20790 LOC_Os08g43170 LOC_Os01g50030 LOC_Os05g23720 LOC_Os09g08910 LOC_Os05g23620 LOC_Os05g47540 LOC_Os05g04510 More.. |
| Downstream Genes | LOC_Os12g32240 LOC_Os12g43630 LOC_Os12g13380 LOC_Os12g41250 LOC_Os12g08260 LOC_Os12g42980 LOC_Os12g03090 LOC_Os12g13390 LOC_Os12g07300 LOC_Os12g05430 LOC_Os11g47760 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 |
| Metacyc Pathways | PWY-5041 METHIONINE-DEG1-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g26850.2 |
| Rice Genome Annotation | LOC_Os11g26850.2 |
| Ricechip | LOC_Os11g26850.2 |
| KEGG | osa:4350455 dosa:Os11t0455500-01 |
| Entrez-Gene | 4350455 |