RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g29400.1 View Network Show in Genome Browser |
| Other Names | Os11g0484500 |
| Description | 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 17054026-17061449 Nucleotide Length: 1527 |
| Protein-coding | LOC_Os11g29400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g14510 LOC_Os03g56460 LOC_Os06g02144 LOC_Os07g44660 LOC_Os02g38840 LOC_Os02g33450 LOC_Os08g43370 LOC_Os06g44910 LOC_Os03g29950 LOC_Os07g22350 LOC_Os01g44050 More.. |
| Downstream Genes | LOC_Os12g08740 LOC_Os11g39670 LOC_Os12g43664 LOC_Os12g42876 LOC_Os12g42884 LOC_Os12g42980 LOC_Os11g42160 LOC_Os11g43900 LOC_Os11g47760 LOC_Os11g33240 LOC_Os12g38900 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00030 rn00480 rn01100 rn01110 rn01120 |
| Metacyc Pathways | OXIDATIVEPENT-PWY RUMP-PWY P122-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g29400.1 |
| Rice Genome Annotation | LOC_Os11g29400.1 |
| Ricechip | LOC_Os11g29400.1 |
| KEGG | osa:4350528 dosa:Os11t0484500-01 |
| Entrez-Gene | 4350528 |