RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g33240.2 View Network Show in Genome Browser |
| Other Names | Os11g0538900 |
| Description | citrate synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 19649309-19655980 Nucleotide Length: 1419 |
| Protein-coding | LOC_Os11g33240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g16900 LOC_Os01g46070 LOC_Os05g49880 LOC_Os01g61380 LOC_Os08g33720 LOC_Os03g16920 LOC_Os09g33500 LOC_Os01g22520 LOC_Os08g42410 LOC_Os06g01630 LOC_Os08g09200 More.. |
| Downstream Genes | LOC_Os11g47760 LOC_Os12g43630 LOC_Os12g01160 LOC_Os12g41760 LOC_Os11g47120 LOC_Os11g47330 LOC_Os12g07810 LOC_Os12g09000 LOC_Os12g37870 LOC_Os12g21798 LOC_Os12g07110 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g33240.2 |
| Rice Genome Annotation | LOC_Os11g33240.2 |
| Ricechip | LOC_Os11g33240.2 |
| KEGG | osa:4350660 dosa:Os11t0538900-01 |
| Entrez-Gene | 4350660 |