RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g34200.1 View Network Show in Genome Browser |
| Other Names | Os11g0544700 |
| Description | histone-like transcription factor and archaeal histone, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 20018260-20024948 Nucleotide Length: 777 |
| Protein-coding | LOC_Os11g34200 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g29500 LOC_Os03g46770 LOC_Os05g38820 LOC_Os03g45410 LOC_Os09g30310 LOC_Os06g06410 LOC_Os08g38780 LOC_Os01g61810 LOC_Os07g41580 LOC_Os06g45640 LOC_Os02g07450 More.. |
| Downstream Genes | LOC_Os12g43600 LOC_Os12g39070 LOC_Os12g25120 LOC_Os12g31800 LOC_Os12g34510 LOC_Os12g01190 LOC_Os12g03090 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g34200.1 |
| Rice Genome Annotation | LOC_Os11g34200.1 |
| Ricechip | LOC_Os11g34200.1 |
| KEGG | osa:4350685 dosa:Os11t0544700-01 |
| Entrez-Gene | 4350685 |