RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g35040.1 View Network Show in Genome Browser |
| Other Names | Os11g0552000 |
| Description | aminotransferase, classes I and II, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 20521765-20525236 Nucleotide Length: 1329 |
| Protein-coding | LOC_Os11g35040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g35540 LOC_Os01g08770 LOC_Os02g14110 LOC_Os02g56300 LOC_Os10g11200 LOC_Os03g14800 LOC_Os01g70380 LOC_Os01g70370 LOC_Os11g31640 LOC_Os02g07160 LOC_Os01g70360 More.. |
| Downstream Genes | LOC_Os12g33610 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 rn01110 rn00360 rn00400 rn00960 rn01210 rn00130 rn00350 rn00401 rn00950 rn00920 rn00340 |
| Metacyc Pathways | ETHYL-PWY PWY-4361 PWY-5079 PHESYN TYRFUMCAT-PWY PWY-702 HOMOSER-METSYN-PWY PWY-801 HISTSYN-PWY |
| Reference | |
|---|---|
| PubMed | 18034312 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g35040.1 |
| Rice Genome Annotation | LOC_Os11g35040.1 |
| Ricechip | LOC_Os11g35040.1 |
| KEGG | osa:4350712 dosa:Os11t0552000-01 |
| Entrez-Gene | 4350712 |