RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g35400.1 View Network Show in Genome Browser |
| Other Names | Os11g0558300 |
| Description | AMP-binding enzyme, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 20735091-20737678 Nucleotide Length: 1986 |
| Protein-coding | LOC_Os11g35400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g25310 LOC_Os01g51170 LOC_Os01g73530 LOC_Os05g01700 |
| Downstream Genes | LOC_Os12g07110 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR160f-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00071 rn01100 |
| Metacyc Pathways | PWY-5143 PWY-5136 FAO-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g35400.1 |
| Rice Genome Annotation | LOC_Os11g35400.1 |
| Ricechip | LOC_Os11g35400.1 |
| KEGG | osa:4350728 dosa:Os11t0558300-01 |
| Entrez-Gene | 4350728 |