RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g36390.1 View Network Show in Genome Browser |
| Other Names | Os11g0572100 |
| Description | RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 21434333-21440041 Nucleotide Length: 3066 |
| Protein-coding | LOC_Os11g36390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g57870 LOC_Os04g48060 LOC_Os02g53500 LOC_Os02g56130 LOC_Os11g08330 LOC_Os07g22400 LOC_Os03g13850 LOC_Os05g48030 LOC_Os02g30800 LOC_Os10g34750 LOC_Os03g52750 More.. |
| Downstream Genes | LOC_Os12g07720 LOC_Os12g13950 LOC_Os12g03130 LOC_Os12g34510 LOC_Os12g25120 LOC_Os12g24080 LOC_Os11g42420 LOC_Os12g44390 LOC_Os12g37400 LOC_Os12g21798 LOC_Os12g28177 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g36390.1 |
| Rice Genome Annotation | LOC_Os11g36390.1 |
| Ricechip | LOC_Os11g36390.1 |
| KEGG | osa:4350754 dosa:Os11t0572100-01 |
| Entrez-Gene | 4350754 |